PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011530
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 271aa    MW: 28879.9 Da    PI: 8.5742
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011530genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.92.4e-312103197
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C++ C+l+p++     p++q +++ +v+k+FG++ ++++++a+p+++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e
  Lus10011530   2 SCNGCRVLRKGCSETCILRPCLqwidsPESQGHATVFVAKFFGRAGLMSFISAVPDSQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQTAVE 99 
                  6***********************************************************************************************99 PP

       DUF260  94 lall 97 
                  ++l+
  Lus10011530 100 TVLR 103
                  9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.5231107IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIDSPE SQGHATVFVA KFFGRAGLMS FISAVPDSQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQTAVET VLRGGSLRAM PELLVAGSGS  120
ADQASDEASE VGVGCSDMWK LSSGGGGDNK DLISPSSNNN HCRFSSSRSK VSPKRKRAEQ  180
PPMMTMKLMT RTSDLDLRLT PSISPKAVPL YKPEIRRHGS PSMNSEESGT TTCLDSSAAP  240
GVWRNGDRDH QYGGLVGGVG GEKKLLSLFV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8295051e-142EU829505.1 Linum usitatissimum clone LU0011G12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525255.11e-116PREDICTED: LOB domain-containing protein 37
SwissprotQ9SN231e-87LBD38_ARATH; LOB domain-containing protein 38
TrEMBLB9SGY61e-116B9SGY6_RICCO; LOB domain-containing protein, putative
STRINGPOPTR_0007s10010.11e-108(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.14e-85LOB domain-containing protein 38